What are the best cenotes options on days like today with heavy rain and high winds?
If you are staying near Akumal, Cenote Azul is very sheltered and small. But not a lot of covered areas, other than trees, and one area at the entrance. Ok if you want to just go in for an hour and swiom/snorkel.
Better idea to go to a place like Dos Ojos or Aktun Chen that has cave-style dry cenotes and underground ones. Go here!
Dos Ojos - cave cenote